Daniel Wibberg

Project

Rhizoctonia solani AG1-IB genome compilation and interpretation with emphasis on fungal pathogenicity determinants

Info

Area: polyomics
Project Start: 1.10.2010
Supervisor(s): Dr. Andreas Schlüter, Prof. Dr. Alfred Pühler, Prof. Dr. Jens Stoye
University: Bielefeld

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Daniel is an associate student of the CLIB-Graduate Cluster.

Project overview

R. solani AG1-IB is a soil-borne plant pathogenic fungus. It affects a wide range of agriculturally important plants and causes devastating losses among economic plants. To determine the draft genome sequence of R. solani, four runs on the Genome Sequencer FLX platform were already performed. In addition, R. solani genome sequence data were now also compared to an EST data set of the same isolate to get insights into expressed R. solani genes. Genes potentially involved in plant pathogenesis will be identified.

Rhizoctonia solani AG1-IB genome compilation and interpretation with emphasis on fungal pathogenicity determinants.

Publications

2012

Maus, I., Wibberg, D., Stantscheff, R., Eikmeyer, F.G., Seffner, A., Boelter, J., Szczepanowski, R., Blom, J., Jaenicke, S., Konig, H., Pühler, A., & Schlüter, A. 2012. Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. J Bact 194(19), 5487 - 5488.

Eikmeyer F, Hadiati A, Szczepanowski R, Wibberg D, Schneiker-Bekel S, Rogers L M, Brown C J, Top E M, Pühler A, Schlüter A. The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution. Plasmid. Vol.68 pp 13-24.

Wibberg D, Heinl S, Eikmeyer F. G., Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A. Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. (2012) J Biotechnol. Vol. 161 pp 153-66.

Stolze Y, Eikmeyer F. G., Wibberg D, Brandis G, Karsten C, Krahn I, Schneiker-Bekel S, Viehöver P, Barsch A, Keck M, Top EM, Niehaus K, Schlüter A. IncP; plasmids of Comamonas sp. and Delftia sp. strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet. (2012) Microbiology. Vol. 158 :pp 2060-72.

Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, Schlüter A. (2012) Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. J Bacteriol. Vol. 194:pp 5487-8.

Luque-Almagro V M, Acera F, Igeño I, Wibberg D, Roldán D, Sáez L P, Hennig M, Quesada A, Huertas J, Blom J, Merchán F, Escribano P, Jaenicke S, Estepa J, Guijo I, Martínez-Luque M, Macías D, Szczepanowski R, Becerra G, Ramirez S, Carmona I, Gutiérrez O, Manso I, Pühler A, Castillo F, Moreno-Vivián C, Schlüter A, Blasco R. Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344 Environ Microbiol. Vol.15(1): pp 253-70.

Wibberg D, Szczepanowski R, Eikmeyer FG, Pühler A, Schlüter A. The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant’s on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates. Plasmid. Vol.69(2): pp 127-37.

Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer FG, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A. Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. J Biotechnol. 2012 Dec 29. doi:pii: S0168-1656(12)00758-4. 10.1016/j.jbiotec.2012.12.010. [Epub ahead of print]

Bonnin RA, Poirel L, Nordmann P, Eikmeyer FG, Wibberg D, Pühler A, Schlüter A. Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa. J Antimicrob Chemother. [Epub ahead of print]

Eikmeyer FG, Rademacher A, Hanreich A, Hennig M, Jaenicke J, Maus I, Wibberg D, Zakrzewski M, Pühler A, Klocke M and Schlüter A (2012). Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms. Biotechnology for Biofuels [Epub ahead of print].

Document


Daniel´s latest poster April 2011
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